Contamination in the drainage channels and creeks with pesticides used in agriculture is of a major concern in many countries. In this study the stream pesticide model RIVWQ (chemical transport model for riverine environments) was assessed for its applicability in simulating pesticide fate in drainage channels. The model was successfully calibrated against field data collected on flows and pesticide concentrations for a drainage channel from a small catchment in the Murrumbidgee Irrigation Area of southwestern New South Wales. The effects of different pesticide loading scenarios from farm fields on channel water quality were analysed by the calibrated model. The model simulated the flow rates and the pesticide concentrations in the drainage channel well. The results of the model simulation suggest that the RIVWQ model can be effectively used for predicting pesticide fate in the drainage channels and exposure assessment of pesticide in the agricultural environment.